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Research Interests

 

Data Mining, Data Classification

Scheduling and Lot Sizing

Mathematical Programming

Supply Chain Management

Data Mining Studies in Bioinformatics

 

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Publications

 

Research Papers in Refereed Journals

      • F. Uney Yuksektepe, `A clustering approach to analyze the wind energy potential of Mardin`, submitted to Renewable Energy, September 2011.

    • F. Uney Yuksektepe, and İ. Karabulut, `Mathematical programming approach to course-teaching assistant assignment problem`, submitted to Optimization Letters, August 2011.

    F. Uney Yuksektepe, and M. Turkay, `Prediction of folding type of proteins using MILP based hyper-box enclosure approach`, submitted to European Journal of Operational Research, December 2010.

  • O. Dagliyan, F. Uney-Yuksektepe, I. H. Kavakli, M. Turkay, `Optimization based tumor classification from microarray gene expression data`, PLoS ONE, 6 (2):e14579, 2011.

  • P. Armutlu, M. E. Ozdemir, F. Uney Yuksektepe, I. H. Kavakli, and M. Turkay, `Classification of drug molecules considering their IC50 values using mixed-integer linear programming based hyper-boxes method`, BMC Bioinformatics, 9, 411-424, 2008.

  • F. Uney Yuksektepe, O. Yilmaz and M. Turkay, `Prediction of Secondary Structures of Proteins using a Two-Stage Method`, Comput. Chem. Eng., 32 (1-2), 78-88, 2008.

  • F. Uney, and M. Turkay, `A Mixed-Integer Programming Approach to the Multi-Class Data Classification Problem`, European Journal of Operational Research, 173 (3), 910 - 920, 2006.

 

Books/Book Chapters

  • M. Turkay, and F. Uney Yuksektepe, "Multi-class data classification via mixed-integer    optimization", Encyclopedia of Optimization, 2nd ed., C.A. Floudas and P.M. Pardalos (Eds.), 2348-2354, Springer, Dordrecht, The Nederlands (2008).

  • F. Uney Yuksektepe, and M. Turkay, "Multi-Group Data Classification via Mixed-Integer Linear Programming Based Hyper-Box Enclosure Approach", Encyclopedia of Data Warehousing and Mining, 2nd ed., J. Wang (ed.), Information Science Reference, Hershey, PA (2008).

  • F. Uney-Yuksektepe, and M. Turkay, "Data Mining", New Frontiers in Total Quality and Strategic Management, S. Kingir (Ed.), 141-152, Gazi Publishing, Ankara (2006). (in Turkish)

  • M. Turkay, O. Yilmaz and F. Uney-Yuksektepe, "Prediction of Secondary Structures of Proteins Using a Two-Stage Method", Computer-Aided Chem. Eng., vol 21B: ESCAPE-16, W. Marquardt and C. Pantelides (Eds.), 1679-1685, Elsevier, Amsterdam (2006).

  • M. Turkay, F. Uney and O. Yilmaz, `Prediction of Folding Type of Proteins Using Mixed-Integer Linear Programming`, computer-Aided Chem. Eng., Vol 20A: ESCAPE-15, L. Puigjaner and A. Espuna (Eds.), 523-528, Elsevier, Amsterdam (2005).

 

Peer Reviewed Conference Proceedings
 

  • F. Uney Yuksektepe, S. S. Uysal and B. Karasu, `Beyin Kanseri Hastaları Üzerinde Veri Madenciliği Çalışmaları`, 10. Üretim Araştırmaları Sempozyumu Bildiriler Kitabı, 198-204, (2010).

 

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Presentations

 

Conferences/Congresses/Symposiums

    • F. Uney Yuksektepe, and R. G. Özdemir, `Synchronized two-stage lot sizing and scheduling problem in automotive industry` in OR 2011, Zurich, Switzerland, August 2011.

      F. Uney Yuksektepe, and İ. Karabulut, `A Mathematical Programming Approach to Course - Teaching Assistant Assignment Problem and an Application` in YA/EM 2011 XXXI. National Congress, Sakarya University , Sakarya, Turkey, July 2011.

    • F. Uney Yuksektepe, D. Dinçer and K. Kaya, `A Mathematical Modeling Approach to Assembly Line Balancing in Automotive Industry` in YA/EM 2011 XXXI. National Congress, Sakarya University, Sakarya, Turkey, July 2011.

    F. Uney Yuksektepe, S. S. Uysal and B. Karasu, `Data Mining Studies on Brain Cancer Patients`in 10. Üretim Araştırmaları Sempozyumu, Girne, KKTC, September 2010.

  • F. Uney Yuksektepe, and M. Turkay, `MILP based Hyper-Box Enclosure Approach for Multi-class Data Classification Problems` in European Conference on Operational Research XXIV, Lisbon, Portugal, July 2010.

    • F. Uney Yuksektepe, and M. Turkay, `Three Stage MILP based Hyper-Box Enclosure Approach for Multi-class Data Classification Problems` in YA/EM 2009 XXXI. National Congress, Bilkent University , Ankara, Turkey, July 2009.

    F. Uney Yuksektepe, and M. Turkay, `Protein folding type prediction via MILP`, in INFORMS Annual Meeting, Washington, D.C., October 2008.

  • F. Uney Yuksektepe, and M. Turkay, `Protein Structural Class Prediction via MILP` in Mini EURO Conference on CBBM, Rome, Italy, September 2008.

  • F. Uney Yuksektepe, and M. Turkay, `A MILP based Hyper-Box Enclosure Approach for Multi-class Data Classification Problems` in YA/EM 2008 XXVIII. National Congress, Istanbul, Turkey, July 2007.

  • F. Uney Yuksektepe, and M. Turkay, `Hyper-Box Enclosure Approach for Multi-Group Data Classification` in YA/EM Ph. D. Student Colloquium, Istanbul, Turkey, November 2007.

  • F. Uney Yuksektepe, and M. Turkay, `MILP based Hyper-Box Enclosure Approach for Multi-class Data Classification`, in INFORMS Annual Meeting, Seattle, WA, November 2007.  

  • F. Uney Yuksektepe, and M. Turkay, `Mixed-Integer Linear Programming Based Hyper-Box Enclosure Approach` in European Conference on Operational Research XXII, Prague, Czech Republic, July 2007.

  • F. Uney Yuksektepe, and M. Turkay, `Mixed-Integer Linear Programming Based Hyper-Box Enclosure Method for Prediction Folding Type of Proteins` in EURO-CBBM Workshop, Prague, Czech Republic, July 2007.

  • F. Uney Yuksektepe, and M. Turkay, `A MILP based Hyper-Box Enclosure Approach for Big Multi-class Data Classification Problems` in YA/EM 2007 XXVII. National Congress, Izmir, Turkey, July 2007.

  • F. Uney, and M. Turkay, `A MIP Approach to Multi-class Data Classification Problem` in YA/EM 2005 XXVII. National Congress, Istanbul, Turkey, July 2005.

  • F. Uney, and M. Turkay, `Classification of Folding Types of Proteins Using MILP` in Euro Summer Institute (ESI) XXII, Ankara, Turkey, July 2004.

 

Tutorials/Education Seminars
 

  • Kiler, "Data Mining Applications in Retail Sector", İstanbul, Turkey, June 2010.

  • Polisan, "Fundamentals of Data Mining", İstanbul, Turkey, June 2010.

  • Aras Kargo, "Data Mining Case Study on Kobi Card Customer Data", İstanbul, Turkey, May 2010.

  • Verisoft, "Fundamentals of Data Mining", İstanbul, Turkey, April 2010.

 

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Undergraduate Theses Supervised

Özcan, Saime Gülden, and Umaç, Müge, Prediction of Wind Energy of Mardin By Data Mining Methods, June 2011.

  • Benli, Abdulkerim, and Kaya, Mustafa Emre, Prediction of Stock Return Values on Istanbul Stock Exchange By Using Data Mining Algorithms, June 2011.

  • Yıldırım, Veysel, and Göze, Sadi, Hierarchical Facility Location in Ozcapen Company, June 2011.

  • Köse, Ozan, and Öztürk, G. Tuluhan, A Mathematical Programming Approach to Shipment Planning in Kastamonu Entegre A. Ş., June 2011.

Dinçer, Dilara, and Kaya, Kayahan, A Mathematical Approach to Assembly Line Balancing in Automotive Industry, January 2011.

  • Uysal, Sadullah Safa, and Karasu, Buğrahan, A Data Mining Case Study on Brain Cancer Patients, June 2010.

  • İyikülah, Gökçe, and Şamiloğlu, Ali Rasim, Data Mining Study in X Airlines Branch of Turkey, June 2010.

  • Kuzu, Burçin Gülsüm, and Karaevli, Uğur, Forecasting Demand Using Statistical and Data Mining Techniques, June 2010.

  • Topçu, Ahmet and Şentürk, Serkan Can, Data Mining Studies to Analyze the Customer Information of a Store, June 2010.

  • Özdemir, Gürcan, An Application of Six Sigma in an Automobile Supplier, June 2010.